Monica T. Dayao

Computational Biology PhD Candidate @ CMU. Spatial Biology Researcher. CMU-Pitt CompBio.

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Hi! I am a Ph.D candidate in the Systems Biology Group at Carnegie Mellon University, advised by Prof. Ziv Bar-Joseph. My current research focuses on developing machine learning methods for the analysis of spatial proteomics datasets, as part of the Human BioMolecular Atlas Program (HuBMAP). I also work with collaborators at Enable Medicine and the University of Pittsburgh Medical Center (UPMC).

Research Interests:
  • machine learning for genomics and proteomics
  • spatial statistics
  • deep learning
  • computer vision
  • survival analysis and prediction
  • unsupervised/self-supervised learning
Previously: [CV]

I earned my BA and MEng degrees in Engineering, with specializations in Information Engineering and Bioengineering, from the University of Cambridge. There, I worked with Dr. Timothy O’Leary and collaborated with Prof. Jim Haseloff on deep learning approaches for the segmentation of plant microscopy images.

Misc.

During my free time, I enjoy climbing (find me at Iron City Boulders!), cooking/baking, biking, golfing, and playing volleyball. I own a small van named Mochi, and am (slowly) working on converting it to a campervan! One day I may make some blog posts about the process.

news

Aug 4, 2023 I received the “Best Oral Presentation” TransMed 2023 Award for my presentation at ISMB/ECCB 2023. Check out the CMU news article.
Jun 30, 2023 My ISMB/ECCB 2023 proceedings paper has been published in Bioinformatics. Check it out here!
Apr 11, 2023 My paper “Deriving spatial features from in situ proteomics imaging to enhance cancer survival analysis” has been accepted to the ISMB/ECCB 2023 proceedings!
Jan 9, 2023 I have been awarded an NIH Kirschstein-NRSA F31 award from the National Library of Medicine. This award will fund my stipend, tuition, technical supplies, and conference travel for the remainder of my PhD.
Dec 12, 2022 I successfully defended my thesis proposal on “Machine learning methods for the analysis and modeling of highly multiplexed spatial proteomic data” and officially became a PhD Candidate.